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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_19527390_19585170_R

Intron Information:

Intron Rank:
152091
Intron Class:
major
Intron Phase:
Intron Coordinates:
19527390 - 19585170
Intron Length:
57781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGCGTGAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
77.7
32.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.7
0.82
0.8
80.6
36.1
Minor 5ss
27.8
-2.5
3.3
39.7
46.3
Minor BPS
60.4
0.32
1.8
74.55
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029419
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025712
19526609 - 19585198
58590