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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195273959_195274485_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
195273959 - 195274485
Intron Length:
527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTACTATTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
AATGTTTTACTA
Flanking Amino Acid:
CLVNRARGLELLSPEDLVNA
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
76.8
33.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
79.8
0.67
0.8
78.2
35
Minor 5ss
28.2
-2.5
3.1
38.3
46.6
Minor BPS
48.9
-0
1.6
57.53
36.7

Associated Gene:

Gene:
VPS36
Ensembl Gene ID:
ENSAPLG00000004957
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005150
195261086 - 195277906
16821