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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195274551_195275140_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
195274551 - 195275140
Intron Length:
590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GTTACTTTGACT
Flanking Amino Acid:
KMLESLKLPLRLRIFDSGVM
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
26.4
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
76.5
0.6
0.9
74
35.3
Minor 5ss
32.1
-2
3.5
46.6
48.7
Minor BPS
73.6
0.82
1.2
84.82
35.4

Associated Gene:

Gene:
VPS36
Ensembl Gene ID:
ENSAPLG00000004957
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005150
195261086 - 195277906
16821