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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195293824_195298715_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
195293824 - 195298715
Intron Length:
4892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TGTTTTCTAACG
Flanking Amino Acid:
NLLLVVLCDYVLGEAEYLLL
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
80.9
33.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
88.1
0.86
0.7
85.4
29.3
Minor 5ss
33.4
-1.9
2.8
44.7
42.7
Minor BPS
60.5
0.19
1.7
68.31
39.3

Associated Gene:

Gene:
THSD1
Ensembl Gene ID:
ENSAPLG00000004848
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004995
195292128 - 195310496
18369