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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195316057_195316136_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
195316057 - 195316136
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCAAGTA
5'SS Class:
major
3'SS Sequence:
GCTCTGTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TTGATCTAAAAG
Flanking Amino Acid:
NDHIYDLLTRGESSLKIDLV
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1
64.7
35.1
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
67.5
0.39
1
65.1
41.2
Minor 5ss
26.8
-2.7
3.6
37.9
46.9
Minor BPS
48.8
-0.2
1.9
56.73
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004714
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004848
195313368 - 195319422
6055