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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195332920_195335075_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
195332920 - 195335075
Intron Length:
2156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
CTTGTCTTGATG
Flanking Amino Acid:
DEDNEQDSCSNTIRRKISPF
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
73.9
32.9
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
89.3
0.88
0.6
84.5
23.3
Minor 5ss
44.9
-0.5
2.8
55.6
43.2
Minor BPS
58.3
0.11
1.5
61.06
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004373
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004561
195330549 - 195347642
17094