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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195335835_195336218_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
195335835 - 195336218
Intron Length:
384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGCCT
5'SS Class:
major
3'SS Sequence:
TCCTTTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTATCTGACAT
Flanking Amino Acid:
VDVLMRVFVEGFRNYFRSKL
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67
44.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
85.2
0.79
0.8
83.6
31.5
Minor 5ss
33
-1.9
3.3
40.8
45
Minor BPS
49.8
0.06
1.9
74.7
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004373
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004561
195330549 - 195347642
17094