Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195341629_195342564_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

195341629 - 195342564

Intron Length:

936

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGACTT

5'SS Class:

strong_major

3'SS Sequence:

ACTTTTACTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAC

U12 Branch Point Sequence:

TCTCTCTTACTA

Flanking Amino Acid:

IIAIHCKGGKGRTGTMVCTW

Intron Amino Acid Position:

307

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

75.5

40.6

Major BPS

74.2

0.6

39.4

Major PPT

80.3

0.68

0.8

73.9

34.9

Minor 5ss

37.5

-1.4

3.3

49.3

46.4

Minor BPS

0.28

1.6

67.76

39.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004373

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004561

195330549 - 195347642

17094