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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195342627_195343589_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
195342627 - 195343589
Intron Length:
963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTGTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
AATGTCTTAACA
Flanking Amino Acid:
IDSDQFESAKESLDYFGERR
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.5
31.7
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
81.1
0.7
0.8
81
31
Minor 5ss
35.5
-1.7
3.1
50.2
45.8
Minor BPS
71.5
0.67
1.3
74.55
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004373
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004561
195330549 - 195347642
17094