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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195344801_195345450_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
195344801 - 195345450
Intron Length:
650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATGAC
U12 Branch Point Sequence:
TATGACGTGACA
Flanking Amino Acid:
IKNLKIYSIHGVGKGNGTDL
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.9
32.8
Major BPS
57
0.17
1.3
51.4
43.9
Major PPT
79.1
0.66
0.7
72.8
32
Minor 5ss
36.3
-1.6
3
48
41.5
Minor BPS
47
-0.2
2.3
64.15
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004373
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004561
195330549 - 195347642
17094