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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195345549_195345919_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
195345549 - 195345919
Intron Length:
371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTGTATCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGTTCTGTATCC
Flanking Amino Acid:
CVCATQGNCKLFFDADSDSV
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
74.6
0.55
1
65.9
44.5
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
51.4
0.02
2.2
70.66
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004373
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004561
195330549 - 195347642
17094