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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195352168_195353168_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
195352168 - 195353168
Intron Length:
1001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGGTGC
5'SS Class:
major
3'SS Sequence:
TTCTTAACCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TGTTTCTTAACC
Flanking Amino Acid:
FASGRSKDELGPIPLLLSGG
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
65
42.1
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
73
0.52
0.8
71.5
33.2
Minor 5ss
36
-1.6
3.5
50.3
46.3
Minor BPS
85.2
1.08
1
86.92
29.7

Associated Gene:

Gene:
SLC25A15
Ensembl Gene ID:
ENSAPLG00000004206
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004325
195350784 - 195362239
11456