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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195360306_195360606_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
195360306 - 195360606
Intron Length:
301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTGTTGTAAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
77.9
31
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
86
0.81
0.6
84.9
22.7
Minor 5ss
42.6
-0.8
3.1
59.6
45
Minor BPS
49.5
0.04
2.3
74.52
43.3

Associated Gene:

Gene:
SLC25A15
Ensembl Gene ID:
ENSAPLG00000004206
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004325
195350784 - 195362239
11456