About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195366613_195368272_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
195366613 - 195368272
Intron Length:
1660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGGC
5'SS Class:
major
3'SS Sequence:
CTGTATTATCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTACCT
Flanking Amino Acid:
SLLLLTGRPRSKIQKLFSTS
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.3
56.6
42.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
70
0.45
1
62.5
43.2
Minor 5ss
34
-1.8
3.8
50.3
46.3
Minor BPS
63.6
0.5
1.8
83.17
37.9

Associated Gene:

Gene:
MRPS31
Ensembl Gene ID:
ENSAPLG00000004031
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021366
195366545 - 195385931
19387
ENSAPLT00000004139
195366545 - 195385931
19387