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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195414781_195474448_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
195414781 - 195474448
Intron Length:
59668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTTAT
U12 Branch Point Sequence:
TACACCTTATTT
Flanking Amino Acid:
GDSNSSAGWKNSIRHNLSLH
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.2
37.4
Major BPS
70
0.5
1
59.6
38.6
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
23.1
-3.1
3.2
29
43.5
Minor BPS
60.9
0.42
1.7
73.83
43.2

Associated Gene:

Gene:
FOXO1
Ensembl Gene ID:
ENSAPLG00000004019
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004117
195414088 - 195476805
62718