About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195608955_195610834_R

Intron Information:

Intron Rank:
140752
Intron Class:
major
Intron Phase:
Intron Coordinates:
195608955 - 195610834
Intron Length:
1880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TGATTATTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTTCCTGATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
71
0.47
1
63.7
46
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
67.1
0.53
1.7
80.35
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023081
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031717
195608439 - 195611426
2988