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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195611244_195613336_F

Intron Information:

Intron Rank:
144155
Intron Class:
major
Intron Phase:
Intron Coordinates:
195611244 - 195613336
Intron Length:
2093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGGCTA
5'SS Class:
major
3'SS Sequence:
TCATTCTTACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TCATTCTTACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
65.7
41.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
76.6
0.6
0.9
70.4
39.8
Minor 5ss
28.4
-2.5
3.3
30.1
43
Minor BPS
64.7
0.46
1.6
71.36
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027697
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023323
195609462 - 195613423
3962