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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195617772_195637956_F

Intron Information:

Intron Rank:
149466
Intron Class:
major
Intron Phase:
Intron Coordinates:
195617772 - 195637956
Intron Length:
20185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACGTAAT
5'SS Class:
major
3'SS Sequence:
TGATCTCTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TCATCTGTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
78.1
38.2
Major BPS
75.8
0.64
1
65.8
41
Major PPT
75.6
0.58
0.9
70.2
36.1
Minor 5ss
35.9
-1.6
3
42.3
44.6
Minor BPS
53.2
0.09
2
66.4
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030428
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021777
195617031 - 195640679
23649