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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195683391_195686996_F

Intron Information:

Intron Rank:
144814
Intron Class:
major
Intron Phase:
Intron Coordinates:
195683391 - 195686996
Intron Length:
3606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAAATG
5'SS Class:
major
3'SS Sequence:
CCTCTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGATCCTGATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
68.8
42.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
86.2
0.81
0.7
83.9
24.2
Minor 5ss
35
-1.7
3.4
48
47.7
Minor BPS
62.1
0.46
1.8
79.15
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028055
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031084
195683221 - 195689841
6621