About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195776790_195778316_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
195776790 - 195778316
Intron Length:
1527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TACTGATTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGATTACTG
Flanking Amino Acid:
NSVQQHKPEQGPLSNLPSLD
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
68.9
0.43
0.9
66.2
39.5
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
48
-0.2
2.3
64.07
44.2

Associated Gene:

Gene:
COG6
Ensembl Gene ID:
ENSAPLG00000008942
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009355
195771043 - 195821153
50111