About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195780490_195781006_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
195780490 - 195781006
Intron Length:
517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGAGGG
5'SS Class:
major
3'SS Sequence:
TTTTCTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTCTGTATGT
Flanking Amino Acid:
LDARQADFVQVLSCVLDPLL
Intron Amino Acid Position:
459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
61
44.1
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
86.9
0.83
0.7
86.2
26.5
Minor 5ss
28.8
-2.4
3.4
38.5
46.5
Minor BPS
48.8
-0
2.4
79.06
43.7

Associated Gene:

Gene:
COG6
Ensembl Gene ID:
ENSAPLG00000008942
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009355
195771043 - 195821153
50111