Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195781139_195790406_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

195781139 - 195790406

Intron Length:

9268

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTTGTTTC

5'SS Class:

major

3'SS Sequence:

TTTTGTTCTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAA

U12 Branch Point Sequence:

GAATTTAAAACA

Flanking Amino Acid:

SLHASKLMDKVELPPPDLGP

Intron Amino Acid Position:

415

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.3

0.64

1.1

76.1

Major BPS

81.6

0.78

0.8

24.9

Major PPT

86.5

0.82

0.7

85.6

29.2

Minor 5ss

47.2

-0.3

2.4

61.9

42.9

Minor BPS

45.6

-0.3

1.8

54.63

37.7

Associated Gene:

Gene:

COG6

Ensembl Gene ID:

ENSAPLG00000008942

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009355

195771043 - 195821153

50111