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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195790525_195792204_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
195790525 - 195792204
Intron Length:
1680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATACAAA
5'SS Class:
major
3'SS Sequence:
ATTTTGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTAATCTTAATT
Flanking Amino Acid:
NLLKFYHHTISGIVGNSAAT
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
69.2
37
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
87.6
0.84
0.8
85.1
34.9
Minor 5ss
44.1
-0.6
2.7
56.7
47.6
Minor BPS
75.6
0.88
1.2
85.3
34.8

Associated Gene:

Gene:
COG6
Ensembl Gene ID:
ENSAPLG00000008942
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009355
195771043 - 195821153
50111