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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195799000_195802628_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
195799000 - 195802628
Intron Length:
3629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGATAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTATTTTACT
Flanking Amino Acid:
EALQDRPVLYKYTLDEFGTA
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
100
1.24
0.5
100
0
Major PPT
72.2
0.5
1
66.8
42.8
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
67.8
0.64
1.8
89.13
35.2

Associated Gene:

Gene:
COG6
Ensembl Gene ID:
ENSAPLG00000008942
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009355
195771043 - 195821153
50111