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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195819922_195821042_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
195819922 - 195821042
Intron Length:
1121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGAGC
5'SS Class:
major
3'SS Sequence:
TTCTACTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTTAATTTAATT
Flanking Amino Acid:
ILETRLDNDKEMLEALKALS
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
63.9
42.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.8
0.74
0.7
81.2
30.4
Minor 5ss
25.8
-2.8
3.2
33.4
42.1
Minor BPS
64.1
0.52
1.5
78.54
37.6

Associated Gene:

Gene:
COG6
Ensembl Gene ID:
ENSAPLG00000008942
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009355
195771043 - 195821153
50111