Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_19586399_19586914_R

Intron Information:

Intron Rank:

152094

Intron Class:

major

Intron Phase:

Intron Coordinates:

19586399 - 19586914

Intron Length:

516

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAGAT

5'SS Class:

strong_major

3'SS Sequence:

TGGCATGTCACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTATTAAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.3

0.8

84.2

26.4

Major BPS

96.5

1.15

0.6

34.2

Major PPT

64.2

0.32

56.6

43.1

Minor 5ss

32.1

-2

3.5

46.6

48.7

Minor BPS

71.5

0.75

1.6

90.38

32.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029419

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044011

19586016 - 19606360

20345

ENSAPLT00000029464

19518716 - 19586965

68250