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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_19586966_19587094_R

Intron Information:

Intron Rank:
152096
Intron Class:
major
Intron Phase:
Intron Coordinates:
19586966 - 19587094
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTGAACCATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTCTGAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
88.9
24.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
64
0.32
1
59.2
41.7
Minor 5ss
39.5
-1.2
2.8
48.3
41.8
Minor BPS
79.3
0.9
1.3
87.1
29.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029419
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044011
19586016 - 19606360
20345