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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_19587127_19606129_R

Intron Information:

Intron Rank:
152097
Intron Class:
major
Intron Phase:
Intron Coordinates:
19587127 - 19606129
Intron Length:
19003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
TGTTCTTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.8
22.5
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
88.3
0.86
0.7
81.1
31
Minor 5ss
36
-1.6
2.6
43.5
43.6
Minor BPS
67.6
0.63
1.5
83.29
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029419
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044011
19586016 - 19606360
20345