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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195958622_195972660_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
195958622 - 195972660
Intron Length:
14039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GATTTCTCAATC
Flanking Amino Acid:
CGNLSNQFELGTCEIGWAYY
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.9
38.6
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
83.9
0.76
0.8
77.6
31.1
Minor 5ss
35.4
-1.7
3
42
44.5
Minor BPS
62.6
0.38
1.5
68.44
36.9

Associated Gene:

Gene:
LHFPL6
Ensembl Gene ID:
ENSAPLG00000008890
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009241
195838820 - 195972779
133960