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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195978307_195979080_R

Intron Information:

Intron Rank:
150577
Intron Class:
major
Intron Phase:
Intron Coordinates:
195978307 - 195979080
Intron Length:
774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGAAA
5'SS Class:
major
3'SS Sequence:
TGCTTGTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
CTGTCTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
69.9
35.7
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
73.7
0.53
0.9
65.1
41.2
Minor 5ss
37
-1.5
3.2
47.6
48.1
Minor BPS
80.9
1.05
1.1
87.35
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028509
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037177
195978077 - 195986333
8257