Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196016509_196016822_R

Intron Information:

Intron Rank:

142421

Intron Class:

major

Intron Phase:

Intron Coordinates:

196016509 - 196016822

Intron Length:

314

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACTGCA

5'SS Class:

strong_major

3'SS Sequence:

TCTTTACTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGTGAT

U12 Branch Point Sequence:

TGGTCTTTACTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.75

1.1

35.3

Major BPS

72.4

0.56

1.2

63.1

44.4

Major PPT

82.8

0.74

0.7

78.1

29.5

Minor 5ss

38.5

-1.3

3.1

50.7

45.7

Minor BPS

63.2

0.49

1.6

41.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023932

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024324

196015645 - 196017018

1374