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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196093944_196094478_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
196093944 - 196094478
Intron Length:
535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGCTG
5'SS Class:
major
3'SS Sequence:
CTCTCTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
CTCTCTTTCACA
Flanking Amino Acid:
CFSEDGPYSVRFTSDYKYLI
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
58.9
45.4
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
83.4
0.75
0.7
78.7
27
Minor 5ss
40.5
-1.1
3.3
55.9
48.3
Minor BPS
62.1
0.37
1.8
70.26
42.8

Associated Gene:

Gene:
NHLRC3
Ensembl Gene ID:
ENSAPLG00000016861
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037498
196092214 - 196100880
8667