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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196096207_196097315_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
196096207 - 196097315
Intron Length:
1109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGAAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTACTGCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TCTTATTTTACA
Flanking Amino Acid:
MNNRLLKLSTDYKEIWLSGE
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.6
33.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
64
0.32
1
61.8
39.6
Minor 5ss
37.7
-1.4
3.1
47.6
48.1
Minor BPS
58.9
0.27
1.8
71.98
40

Associated Gene:

Gene:
NHLRC3
Ensembl Gene ID:
ENSAPLG00000016861
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037498
196092214 - 196100880
8667