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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196098173_196099194_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
196098173 - 196099194
Intron Length:
1022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAATAT
U12 Branch Point Sequence:
GTTTTCGTAATA
Flanking Amino Acid:
SLHGLVYVGQRGDDVPKVLV
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
71.2
34.5
Major BPS
67.5
0.44
1.1
63.7
42.3
Major PPT
90.2
0.9
0.7
88.4
28.7
Minor 5ss
28.3
-2.5
3.1
31.3
36.6
Minor BPS
61.8
0.37
2
75.34
36.5

Associated Gene:

Gene:
NHLRC3
Ensembl Gene ID:
ENSAPLG00000016861
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037498
196092214 - 196100880
8667