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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196105532_196107208_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
196105532 - 196107208
Intron Length:
1677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TTTTTATTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCATTTTTATTT
Flanking Amino Acid:
DKLIALEILASNIVDAQNYR
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
71.5
38.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.2
0.88
0.7
85.8
27.5
Minor 5ss
38.5
-1.3
2.7
48
34.4
Minor BPS
58.4
0.34
1.5
71.47
40.5

Associated Gene:

Gene:
PROSER1
Ensembl Gene ID:
ENSAPLG00000003606
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044115
196100901 - 196121422
20522
ENSAPLT00000003707
196100901 - 196118748
17848