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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196117250_196121416_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
196117250 - 196121416
Intron Length:
4167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTGC
5'SS Class:
major
3'SS Sequence:
TTTTTCTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTTTTATTAATT
Flanking Amino Acid:
SAAAQSALLQE*
Intron Amino Acid Position:
900

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
66.7
39.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
89.7
0.89
0.6
89.1
19.9
Minor 5ss
37.1
-1.5
3.3
50.7
45.8
Minor BPS
69.9
0.7
1.6
84.39
36.6

Associated Gene:

Gene:
PROSER1
Ensembl Gene ID:
ENSAPLG00000003606
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044115
196100901 - 196121422
20522