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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196129401_196130231_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
196129401 - 196130231
Intron Length:
831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTAG
5'SS Class:
strong_major
3'SS Sequence:
AATATTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAATTTTAAAAT
Flanking Amino Acid:
FPFSIWACIKVVREYERAVV
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
38.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
70.7
0.47
0.9
62.6
43.2
Minor 5ss
43.2
-0.7
2.9
55
49.2
Minor BPS
53.3
0.18
1.7
70.66
40.2

Associated Gene:

Gene:
STOML3
Ensembl Gene ID:
ENSAPLG00000003783
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003875
196125339 - 196134236
8898