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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196130305_196131401_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
196130305 - 196131401
Intron Length:
1097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAACACA
5'SS Class:
major
3'SS Sequence:
TTTTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
RILPKKSKGPGLILILPCTD
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
70
35.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.8
0.99
0.6
92.5
25.7
Minor 5ss
33.6
-1.9
2.9
40.7
45.3
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
STOML3
Ensembl Gene ID:
ENSAPLG00000003783
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003875
196125339 - 196134236
8898