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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196140849_196141605_R

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
196140849 - 196141605
Intron Length:
757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TCTACCCAGACT
Flanking Amino Acid:
FVCYQPIADYVYEVELLNST
Intron Amino Acid Position:
1570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.3
40.1
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
82
0.72
0.9
76.8
37.3
Minor 5ss
32.6
-2
3.4
44.3
44.6
Minor BPS
49
0
2.1
72.8
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004070
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031107
196135372 - 196181222
45851
ENSAPLT00000022889
196135372 - 196181222
45851
ENSAPLT00000004236
196135372 - 196181222
45851