About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196141699_196142073_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
196141699 - 196142073
Intron Length:
375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCATTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
ATTTTCTTCATT
Flanking Amino Acid:
CQANACQCAEGPCPRQKSTF
Intron Amino Acid Position:
1539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
81.5
0.71
0.8
74.5
35
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
68.7
0.67
1.7
85.57
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004070
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004236
196135372 - 196181222
45851
ENSAPLT00000031107
196135372 - 196181222
45851
ENSAPLT00000022889
196135372 - 196181222
45851