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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196143296_196144521_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
196143296 - 196144521
Intron Length:
1226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
GTTTACTCATCA
Flanking Amino Acid:
EGKVLLYFGELTTGPDPDCI
Intron Amino Acid Position:
1473

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
76.5
34.2
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
95.2
1.02
0.5
89
28.1
Minor 5ss
38
-1.3
3
48.1
47.6
Minor BPS
51.8
0.05
2
69.94
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004070
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031107
196135372 - 196181222
45851
ENSAPLT00000022889
196135372 - 196181222
45851
ENSAPLT00000004236
196135372 - 196181222
45851