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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196144597_196145180_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
196144597 - 196145180
Intron Length:
584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTGTTCTGATAT
Flanking Amino Acid:
LEPDTKDLEQLVTSSDKYIQ
Intron Amino Acid Position:
1448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
85.9
23.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
86.8
0.83
0.7
81.7
30.4
Minor 5ss
29.7
-2.3
3
39.4
46.1
Minor BPS
51.9
0.14
1.8
73.74
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004070
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031107
196135372 - 196181222
45851
ENSAPLT00000022889
196135372 - 196181222
45851
ENSAPLT00000004236
196135372 - 196181222
45851