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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196147418_196148105_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
196147418 - 196148105
Intron Length:
688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTATCACCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
AGTTTATCACCT
Flanking Amino Acid:
VEMEGRVKYADSIYSEEYYN
Intron Amino Acid Position:
1361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
28.7
Major BPS
78.3
0.7
1
80
32.1
Major PPT
76.9
0.6
0.9
67.5
39
Minor 5ss
26.7
-2.7
3
27.8
37.9
Minor BPS
46.8
-0.1
2
68.47
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004070
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031107
196135372 - 196181222
45851
ENSAPLT00000022889
196135372 - 196181222
45851
ENSAPLT00000004236
196135372 - 196181222
45851