Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196161324_196161858_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

196161324 - 196161858

Intron Length:

535

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAAGAAT

5'SS Class:

major

3'SS Sequence:

CTTTGTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCAGAA

U12 Branch Point Sequence:

GAATCCCCACCT

Flanking Amino Acid:

KKKVRVGLARYFDEEEEVFD

Intron Amino Acid Position:

743

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.1

0.5

1.1

Major BPS

52.6

0.07

50.3

35.4

Major PPT

89.9

0.9

0.7

29.4

Minor 5ss

35.7

-1.6

3.4

52.5

44.7

Minor BPS

45.6

-0.2

2.1

64.54

44.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004070

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004236

196135372 - 196181222

45851

ENSAPLT00000031107

196135372 - 196181222

45851

ENSAPLT00000022889

196135372 - 196181222

45851