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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196163472_196163880_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
196163472 - 196163880
Intron Length:
409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GCTATTTTATTT
Flanking Amino Acid:
NKKNKLTAKKVFNAMNSYDL
Intron Amino Acid Position:
609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.7
27.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83
0.74
0.9
80.8
36.4
Minor 5ss
34.5
-1.8
3
40.8
39.4
Minor BPS
49.8
0.07
1.6
64.26
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004070
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031107
196135372 - 196181222
45851
ENSAPLT00000022889
196135372 - 196181222
45851
ENSAPLT00000004236
196135372 - 196181222
45851