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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196168812_196170600_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
196168812 - 196170600
Intron Length:
1789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTGGTATTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TTGGTATTAACA
Flanking Amino Acid:
YVAVTAVETASGEMREEELN
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.8
86
23.7
Major BPS
72.7
0.56
1
75
30.1
Major PPT
71.5
0.48
1
66.5
43.2
Minor 5ss
35.6
-1.6
2.8
42.6
38.4
Minor BPS
61
0.34
1.7
71.79
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004070
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004236
196135372 - 196181222
45851
ENSAPLT00000031107
196135372 - 196181222
45851
ENSAPLT00000022889
196135372 - 196181222
45851