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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196174556_196175523_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
196174556 - 196175523
Intron Length:
968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATG
Flanking Amino Acid:
ASAEFEVKKYELPSFEVKLI
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.1
31.1
Major BPS
100
1.24
0.5
100
0
Major PPT
89.2
0.88
0.7
85.7
27.7
Minor 5ss
29.9
-2.3
3.3
35
42.5
Minor BPS
60.3
0.18
1.8
69.97
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004070
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031107
196135372 - 196181222
45851
ENSAPLT00000022889
196135372 - 196181222
45851
ENSAPLT00000004236
196135372 - 196181222
45851