Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196178450_196181157_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

196178450 - 196181157

Intron Length:

2708

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATC|GTAAGTACA

5'SS Class:

major

3'SS Sequence:

TATGTTGTTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTAAT

U12 Branch Point Sequence:

TTTTGTTTAATG

Flanking Amino Acid:

LLLANTQQAPSFLITAPNVV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.5

0.53

1.3

73.3

37.4

Major BPS

81.8

0.79

1.1

34.5

Major PPT

0.59

0.9

73.8

41.4

Minor 5ss

37.5

-1.4

2.6

44.5

37.1

Minor BPS

67.9

0.42

1.8

74.65

38.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004070

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004236

196135372 - 196181222

45851

ENSAPLT00000031107

196135372 - 196181222

45851

ENSAPLT00000022889

196135372 - 196181222

45851