Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196211987_196221534_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

196211987 - 196221534

Intron Length:

9548

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCAACC

5'SS Class:

major

3'SS Sequence:

TTTCTTTTCGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATCAT

U12 Branch Point Sequence:

TCACCTCTAACC

Flanking Amino Acid:

CGGTIGTDGQVLNLVQSYVT

Intron Amino Acid Position:

2647

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.4

0.43

1.2

63.6

41.2

Major BPS

71.6

0.54

33.1

Major PPT

86.8

0.83

0.6

84.4

23.3

Minor 5ss

39.2

-1.2

3.1

53.6

43.2

Minor BPS

56.2

0.18

1.7

65.45

39.9

Associated Gene:

Gene:

FREM2

Ensembl Gene ID:

ENSAPLG00000005184

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005370

196200137 - 196322870

122734