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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196221867_196222487_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
196221867 - 196222487
Intron Length:
621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGATAA
5'SS Class:
major
3'SS Sequence:
TAATGTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AGTTCTATAAAT
Flanking Amino Acid:
KLTVTMPHIDGMLPVISTRE
Intron Amino Acid Position:
2536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
68.3
32.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
76.2
0.59
0.9
74
41.1
Minor 5ss
43.5
-0.7
2.9
52.3
46.8
Minor BPS
60.2
0.4
1.7
77.81
37.8

Associated Gene:

Gene:
FREM2
Ensembl Gene ID:
ENSAPLG00000005184
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005370
196200137 - 196322870
122734